Variant report

Variant	rs2877612
Chromosome Location	chr14:24735624-24735625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr14:24735399-24736131	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:24734952..24736987-chr14:24899499..24901815,2	MCF-7	breast:
2	chr14:24731417..24734769-chr14:24734845..24736796,3	K562	blood:
3	chr14:24731299..24737661-chr14:24737668..24742603,15	K562	blood:

Variant related genes	Relation type
TGM1	TF binding region
ENSG00000139899	Chromatin interaction
ENSG00000100949	Chromatin interaction
ENSG00000092295	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11622118	0.98[ASN][1000 genomes]
rs2075530	0.97[ASN][1000 genomes]
rs2281473	0.98[ASN][1000 genomes]
rs2295311	0.98[ASN][1000 genomes]
rs2295315	0.98[ASN][1000 genomes]
rs3814813	0.97[ASN][1000 genomes]
rs3825585	0.98[ASN][1000 genomes]
rs6573651	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573653	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs941505	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24712600-24740000	Weak transcription	Small Intestine	intestine
2	chr14:24713000-24740000	Weak transcription	Right Atrium	heart
3	chr14:24716400-24735800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr14:24716400-24739800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr14:24716600-24739800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr14:24717200-24736000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr14:24720000-24739600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr14:24721200-24739400	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr14:24721600-24739800	Weak transcription	HUVEC	blood vessel
10	chr14:24722600-24740000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr14:24725800-24737800	Weak transcription	Psoas Muscle	Psoas
12	chr14:24726200-24739800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr14:24726800-24739800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr14:24727800-24739800	Weak transcription	K562	blood
15	chr14:24728400-24739800	Strong transcription	Fetal Intestine Small	intestine
16	chr14:24728600-24736800	Strong transcription	Spleen	Spleen
17	chr14:24729000-24736200	Weak transcription	Fetal Lung	lung
18	chr14:24729000-24738000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr14:24729000-24739800	Weak transcription	NH-A	brain
20	chr14:24729000-24740000	Weak transcription	HSMM	muscle
21	chr14:24729200-24738800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr14:24729600-24739600	Strong transcription	Fetal Stomach	stomach
23	chr14:24729600-24739800	Weak transcription	A549	lung
24	chr14:24729800-24739800	Weak transcription	Hela-S3	cervix
25	chr14:24731400-24736800	Weak transcription	Stomach Mucosa	stomach
26	chr14:24731800-24739200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr14:24732000-24739400	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr14:24732000-24739600	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr14:24732000-24739600	Strong transcription	Lung	lung
30	chr14:24732600-24740000	Weak transcription	Colon Smooth Muscle	Colon
31	chr14:24732800-24739000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr14:24732800-24739000	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr14:24732800-24739600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr14:24732800-24739800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr14:24733200-24737200	Strong transcription	Brain Substantia Nigra	brain
36	chr14:24733200-24739200	Strong transcription	Brain Inferior Temporal Lobe	brain
37	chr14:24733200-24739400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr14:24733200-24739400	Strong transcription	Skeletal Muscle Male	skeletal muscle
39	chr14:24733200-24740000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr14:24733400-24739200	Strong transcription	Stomach Smooth Muscle	stomach
41	chr14:24733600-24736000	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr14:24733600-24736800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr14:24733800-24737200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr14:24733800-24739000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr14:24733800-24739200	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr14:24733800-24739400	Strong transcription	HepG2	liver
47	chr14:24733800-24739800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr14:24734000-24736800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr14:24734000-24737000	Strong transcription	Primary hematopoietic stem cells	blood
50	chr14:24734000-24738800	Strong transcription	Primary B cells from peripheral blood	blood

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