Variant report

Variant	rs28778940
Chromosome Location	chr9:98298352-98298353
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs16909923	0.82[AFR][1000 genomes]
rs16909927	0.82[AFR][1000 genomes]
rs16909930	0.82[AFR][1000 genomes]
rs16909952	0.86[AFR][1000 genomes]
rs16909953	0.86[AFR][1000 genomes]
rs16909955	0.86[AFR][1000 genomes]
rs16909958	0.82[AFR][1000 genomes]
rs16909964	0.82[AFR][1000 genomes]
rs16909967	0.91[AFR][1000 genomes]
rs16909970	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16909974	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2405050	0.86[AFR][1000 genomes]
rs2405373	0.82[EUR][1000 genomes]
rs28361526	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28372466	0.81[AFR][1000 genomes]
rs28384095	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28393820	0.81[EUR][1000 genomes]
rs28428695	0.82[AFR][1000 genomes]
rs28453815	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28489106	0.88[EUR][1000 genomes]
rs28535514	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28536742	0.87[EUR][1000 genomes]
rs28682502	0.82[AFR][1000 genomes]
rs28713678	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3847313	0.86[AFR][1000 genomes]
rs3858091	0.83[AFR][1000 genomes]
rs3858093	0.86[AFR][1000 genomes]
rs57594805	0.82[AFR][1000 genomes]
rs57686793	0.85[AFR][1000 genomes]
rs57735870	0.86[AFR][1000 genomes]
rs57793730	0.81[AFR][1000 genomes]
rs59139263	0.83[AFR][1000 genomes]
rs59208894	0.86[AFR][1000 genomes]
rs59836541	0.85[AFR][1000 genomes]
rs60529258	0.85[AFR][1000 genomes]
rs61128152	0.81[AFR][1000 genomes]
rs61660304	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv831658	chr9:98152971-98342178	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv430083	chr9:98204245-98445645	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv824994	chr9:98239963-98314431	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv824995	chr9:98243455-98326547	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98291600-98307200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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