Variant report

Variant	rs28786426
Chromosome Location	chr19:40124070-40124071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10904554	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10904555	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10904556	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10904557	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10904558	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11253388	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11253390	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11253391	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11253392	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11253393	0.92[AMR][1000 genomes]
rs11253394	0.90[AMR][1000 genomes]
rs11253395	0.92[AMR][1000 genomes]
rs11253396	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11253397	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11253398	0.82[AMR][1000 genomes]
rs11253402	0.81[AMR][1000 genomes]
rs11253403	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11595385	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12767043	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12767062	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12767172	0.94[AMR][1000 genomes]
rs12767287	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12771845	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12776447	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1536336	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2253475	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34383514	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34778553	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35342920	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579509	chr19:40004640-40133438	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv34120	chr19:40044635-40131820	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1062653	chr19:40123868-40163241	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1057361	chr19:40123868-40310996	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40122000-40127600	Weak transcription	Placenta	Placenta

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