Variant report

Variant	rs28790031
Chromosome Location	chr14:56698935-56698936
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10445425	0.80[AMR][1000 genomes]
rs11877166	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12955316	0.88[AMR][1000 genomes]
rs12958791	0.83[AMR][1000 genomes]
rs12963518	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12965571	0.89[AMR][1000 genomes]
rs12969917	0.89[AMR][1000 genomes]
rs13381564	0.83[AMR][1000 genomes]
rs1815925	0.83[AMR][1000 genomes]
rs1986750	0.86[AMR][1000 genomes]
rs1986751	0.86[AMR][1000 genomes]
rs2851923	0.88[AMR][1000 genomes]
rs28648884	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4239305	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4296321	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4299212	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4303617	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4306582	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4321257	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4337367	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4402627	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4416083	0.89[AMR][1000 genomes]
rs4417605	0.86[AMR][1000 genomes]
rs4417606	0.86[AMR][1000 genomes]
rs4419117	0.89[AMR][1000 genomes]
rs4452021	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4456573	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4464145	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4480870	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4519391	0.87[AMR][1000 genomes]
rs4528648	0.89[AMR][1000 genomes]
rs4538071	0.89[AMR][1000 genomes]
rs4572475	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4583319	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4591211	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4621045	0.88[AMR][1000 genomes]
rs4796945	0.86[AMR][1000 genomes]
rs4796946	0.88[AMR][1000 genomes]
rs4796947	0.89[AMR][1000 genomes]
rs4797623	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4797624	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4797625	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4797631	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4797632	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4797633	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4797634	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4797635	0.89[AMR][1000 genomes]
rs4797636	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4797637	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4797640	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs60311032	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6505715	0.86[AMR][1000 genomes]
rs6505717	0.88[AMR][1000 genomes]
rs6505720	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7227857	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7239346	0.89[AMR][1000 genomes]
rs7239947	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7240093	0.89[AMR][1000 genomes]
rs7242225	0.80[AMR][1000 genomes]
rs7242541	0.89[AMR][1000 genomes]
rs7243248	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7244723	0.89[AMR][1000 genomes]
rs73410960	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8082888	0.88[AMR][1000 genomes]
rs8087637	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8091463	0.89[AMR][1000 genomes]
rs8091585	0.89[AMR][1000 genomes]
rs8093417	0.89[AMR][1000 genomes]
rs8095234	0.88[AMR][1000 genomes]
rs8095647	0.85[AMR][1000 genomes]
rs9303759	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9303760	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9945491	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9948384	0.86[AMR][1000 genomes]
rs9949350	0.86[AMR][1000 genomes]
rs9951744	0.86[AMR][1000 genomes]
rs9951822	0.86[AMR][1000 genomes]
rs9951904	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9951929	0.85[AMR][1000 genomes]
rs9953892	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9954852	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9954861	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9954884	0.88[AMR][1000 genomes]
rs9955629	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9956465	0.89[AMR][1000 genomes]
rs9956997	0.89[AMR][1000 genomes]
rs9957303	0.89[AMR][1000 genomes]
rs9959641	0.89[AMR][1000 genomes]
rs9963587	0.89[AMR][1000 genomes]
rs9965004	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9965108	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9966965	0.95[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9967372	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533129	chr14:56568535-56819234	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1844788	chr14:56594420-56771207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1044886	chr14:56689682-56834648	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv542104	chr14:56689682-56834648	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56682200-56699200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr14:56686800-56702000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr14:56688000-56707800	Weak transcription	Spleen	Spleen
4	chr14:56689600-56699200	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr14:56689600-56710000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr14:56689800-56715800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr14:56692400-56703000	Weak transcription	Aorta	Aorta
8	chr14:56692400-56710000	Weak transcription	Fetal Stomach	stomach
9	chr14:56692600-56701400	Weak transcription	Ovary	ovary
10	chr14:56692600-56703200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr14:56692800-56699200	Weak transcription	Stomach Mucosa	stomach
12	chr14:56693000-56704000	Weak transcription	Primary T cells from cord blood	blood
13	chr14:56693200-56703000	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr14:56693200-56724400	Weak transcription	Gastric	stomach
15	chr14:56694000-56701600	Weak transcription	Pancreas	Pancrea
16	chr14:56694000-56723000	Weak transcription	Lung	lung
17	chr14:56695200-56702200	Weak transcription	Dnd41	blood
18	chr14:56696000-56703200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr14:56696000-56706400	Weak transcription	Thymus	Thymus
20	chr14:56696000-56715600	Weak transcription	Fetal Thymus	thymus
21	chr14:56696800-56703000	Weak transcription	H1 Cell Line	embryonic stem cell

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