Variant report

Variant	rs28791815
Chromosome Location	chr8:95620438-95620439
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95617461..95631086-chr8:95649496..95657317,31	MCF-7	breast:
2	chr8:95620423..95628872-chr8:95649966..95659787,20	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104413	Chromatin interaction
ENSG00000261437	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10086311	0.83[AMR][1000 genomes]
rs10087221	0.83[AMR][1000 genomes]
rs10089982	0.83[AMR][1000 genomes]
rs10090029	0.83[AMR][1000 genomes]
rs10090628	0.83[AMR][1000 genomes]
rs10094298	0.83[AMR][1000 genomes]
rs10094477	0.83[AMR][1000 genomes]
rs10095474	0.83[AMR][1000 genomes]
rs10095883	0.83[AMR][1000 genomes]
rs10098682	0.83[AMR][1000 genomes]
rs10104301	0.83[AMR][1000 genomes]
rs10104797	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10105476	0.83[AMR][1000 genomes]
rs10441536	0.83[AMR][1000 genomes]
rs1055798	0.83[AMR][1000 genomes]
rs12334369	0.83[AMR][1000 genomes]
rs12334783	0.83[AMR][1000 genomes]
rs12334844	0.83[AMR][1000 genomes]
rs12334990	0.83[AMR][1000 genomes]
rs12335104	0.83[AMR][1000 genomes]
rs13438933	0.83[AMR][1000 genomes]
rs13438940	0.83[AMR][1000 genomes]
rs13439558	0.83[AMR][1000 genomes]
rs13439676	0.83[AMR][1000 genomes]
rs28406352	0.83[AMR][1000 genomes]
rs28409018	0.83[AMR][1000 genomes]
rs28436849	0.83[AMR][1000 genomes]
rs28449797	0.83[AMR][1000 genomes]
rs28475734	0.83[AMR][1000 genomes]
rs28480604	0.83[AMR][1000 genomes]
rs28481457	0.83[AMR][1000 genomes]
rs28498495	0.83[AMR][1000 genomes]
rs28502182	0.83[AMR][1000 genomes]
rs28524089	0.83[AMR][1000 genomes]
rs28526027	0.83[AMR][1000 genomes]
rs28539788	0.83[AMR][1000 genomes]
rs28563951	0.83[AMR][1000 genomes]
rs28564036	0.83[AMR][1000 genomes]
rs28634264	0.83[AMR][1000 genomes]
rs28666401	0.83[AMR][1000 genomes]
rs28775004	0.83[AMR][1000 genomes]
rs28829590	0.83[AMR][1000 genomes]
rs4567002	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv429928	chr8:95488800-95672033	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv429929	chr8:95564533-95676894	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv516679	chr8:95616980-95638496	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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