Variant report

Variant	rs28792459
Chromosome Location	chr14:40828164-40828165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10131202	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10141835	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10142213	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10144817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10149680	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10150254	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10220641	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10872933	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11846371	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11851182	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1546936	0.85[ASN][1000 genomes]
rs1546937	0.85[ASN][1000 genomes]
rs17110478	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17110481	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1950240	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1950244	0.85[ASN][1000 genomes]
rs1950245	0.85[ASN][1000 genomes]
rs1950246	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1952945	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1955534	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1955537	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1955542	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1955551	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28644406	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28874933	0.85[ASN][1000 genomes]
rs4525407	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4903574	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4903637	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4903648	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4903691	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57339948	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57911326	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58792695	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59061086	0.85[AMR][1000 genomes]
rs59106348	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60053221	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60112021	0.84[ASN][1000 genomes]
rs6571997	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6571998	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66841506	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66960583	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67001402	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68024490	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7144842	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7149970	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7150686	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7151598	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7153429	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8004374	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8005640	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8006469	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8007198	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8007422	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8012092	0.86[ASN][1000 genomes]
rs961714	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9671451	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9671468	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9671477	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751272	chr14:40216880-40913230	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv901663	chr14:40640214-40879975	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1817307	chr14:40647649-40833306	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv901664	chr14:40663978-41432350	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1040019	chr14:40674730-40891003	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv542050	chr14:40674730-40891003	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv901666	chr14:40701679-40859517	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv901667	chr14:40701679-40863379	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1045746	chr14:40759826-40852546	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3424823	chr14:40816251-40835900	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
11	nsv983769	chr14:40823617-40852104	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:40826800-40828200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr14:40827800-40828200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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