Variant report

Variant	rs28792777
Chromosome Location	chr7:11233252-11233253
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:57)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:57 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3A	chr7:11232681-11233452	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr7:11233047-11233853	SK-N-MC	brain:	n/a	n/a
3	GATA3	chr7:11232767-11233539	MCF-7	breast:	n/a	n/a
4	POLR2A	chr7:11232719-11233453	H1-hESC	embryonic stem cell:	n/a	n/a
5	MAX	chr7:11233040-11233470	MCF-7	breast:	n/a	n/a
6	EP300	chr7:11233113-11233414	T-47D	breast:	n/a	chr7:11233331-11233344
7	STAT3	chr7:11233226-11233407	MCF10A-Er-Src	breast:	n/a	n/a
8	CTCF	chr7:11233200-11233350	AG09319	gingival:	n/a	n/a
9	EP300	chr7:11232904-11233597	T-47D	breast:	n/a	chr7:11233331-11233344
10	GATA3	chr7:11232999-11233473	T-47D	breast:	n/a	n/a
11	ZNF217	chr7:11233155-11233459	MCF-7	breast:	n/a	n/a
12	STAT3	chr7:11233156-11233265	MCF10A-Er-Src	breast:	n/a	n/a
13	POLR2A	chr7:11233209-11233426	H1-hESC	embryonic stem cell:	n/a	n/a
14	MYC	chr7:11233134-11233532	MCF10A-Er-Src	breast:	n/a	n/a
15	SIN3AK20	chr7:11232829-11233608	MCF-7	breast:	n/a	n/a
16	CEBPB	chr7:11232885-11233417	H1-hESC	embryonic stem cell:	n/a	n/a
17	POLR2A	chr7:11232167-11233973	SK-N-MC	brain:	n/a	n/a
18	SP1	chr7:11232693-11233514	H1-hESC	embryonic stem cell:	n/a	chr7:11233078-11233089
19	CTCF	chr7:11233200-11233350	HPAF	blood vessel:	n/a	n/a
20	GATA3	chr7:11232911-11233595	MCF-7	breast:	n/a	n/a
21	TCF7L2	chr7:11233079-11233416	MCF-7	breast:	n/a	n/a
22	STAT3	chr7:11233144-11233344	MCF10A-Er-Src	breast:	n/a	n/a
23	POLR2A	chr7:11232583-11233644	H1-hESC	embryonic stem cell:	n/a	n/a
24	NR2F2	chr7:11232943-11233522	MCF-7	breast:	n/a	n/a
25	POLR2A	chr7:11232602-11233533	H1-hESC	embryonic stem cell:	n/a	n/a
26	CEBPB	chr7:11233120-11233482	MCF-7	breast:	n/a	n/a
27	CTCF	chr7:11233200-11233350	HMF	breast:	n/a	n/a
28	FOXA1	chr7:11233165-11233440	HepG2	liver:	n/a	n/a
29	NR2F2	chr7:11233043-11233636	MCF-7	breast:	n/a	n/a
30	GATA3	chr7:11233157-11233363	MCF-7	breast:	n/a	n/a
31	GATA3	chr7:11233034-11233459	T-47D	breast:	n/a	n/a
32	FOXA2	chr7:11233143-11233387	HepG2	liver:	n/a	n/a
33	FOXA1	chr7:11233020-11233498	T-47D	breast:	n/a	n/a
34	TBP	chr7:11232876-11233436	H1-hESC	embryonic stem cell:	n/a	n/a
35	MYC	chr7:11233152-11233535	H1-hESC	embryonic stem cell:	n/a	n/a
36	RAD21	chr7:11233122-11233471	H1-hESC	embryonic stem cell:	n/a	n/a
37	KAP1	chr7:11232950-11233555	HEK293	kidney:	n/a	n/a
38	TAF1	chr7:11232774-11233518	H1-hESC	embryonic stem cell:	n/a	n/a
39	MYC	chr7:11233188-11233356	MCF10A-Er-Src	breast:	n/a	n/a
40	GATA3	chr7:11232799-11233743	MCF-7	breast:	n/a	n/a
41	MAX	chr7:11233125-11233468	H1-hESC	embryonic stem cell:	n/a	n/a
42	MAX	chr7:11232824-11233547	H1-hESC	embryonic stem cell:	n/a	n/a
43	FOXA2	chr7:11233133-11233471	A549	lung:	n/a	n/a
44	YY1	chr7:11232992-11233495	H1-hESC	embryonic stem cell:	n/a	n/a
45	CTCF	chr7:11233160-11233310	NHDF-neo	bronchial:	n/a	n/a
46	FOS	chr7:11233174-11233379	MCF10A-Er-Src	breast:	n/a	n/a
47	POLR2A	chr7:11233120-11233477	H1-hESC	embryonic stem cell:	n/a	n/a
48	GTF2F1	chr7:11233252-11233296	H1-hESC	embryonic stem cell:	n/a	n/a
49	MXI1	chr7:11232707-11233396	H1-hESC	embryonic stem cell:	n/a	n/a
50	TAF1	chr7:11233098-11233487	H1-hESC	embryonic stem cell:	n/a	n/a

No data

Variant related genes	Relation type
ENSG00000230333	TF binding region

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73679507	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067780	chr7:10649696-11329787	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv491695	chr7:10649696-11329787	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1019888	chr7:10712858-11496785	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1029836	chr7:10713523-11492751	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv538730	chr7:10713523-11492751	Weak transcription Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv532092	chr7:10731350-11414759	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv1024171	chr7:10810444-11559156	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv949387	chr7:10815994-11281536	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
9	nsv1029882	chr7:10872162-11371145	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	nsv817291	chr7:10875417-11562683	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
11	nsv1030035	chr7:11027819-11256089	Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
12	nsv428162	chr7:11085784-11359333	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
13	nsv830901	chr7:11093455-11272219	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
14	nsv606196	chr7:11144030-11255948	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
15	nsv1029654	chr7:11147593-11263834	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
16	nsv538731	chr7:11147593-11263834	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
17	nsv523279	chr7:11198193-11473561	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
18	nsv518180	chr7:11198193-11475819	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
19	nsv1015837	chr7:11208733-11475112	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
20	nsv538732	chr7:11208733-11475112	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
21	nsv1028326	chr7:11221209-11754436	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
22	nsv538733	chr7:11221209-11754436	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
23	esv1797921	chr7:11228777-11236647	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11230800-11233600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:11231800-11233400	Enhancers	Placenta	Placenta
3	chr7:11231800-11235200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:11232000-11234000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:11232200-11233400	Flanking Active TSS	Adipose Nuclei	Adipose
6	chr7:11232200-11233400	Active TSS	NHDF-Ad	bronchial
7	chr7:11232200-11233600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:11232200-11233600	Flanking Active TSS	Osteobl	bone
9	chr7:11232200-11234600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:11232400-11233400	Active TSS	Brain Anterior Caudate	brain
11	chr7:11232400-11233400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr7:11232400-11233400	Active TSS	Duodenum Smooth Muscle	Duodenum
13	chr7:11232400-11233400	Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr7:11232400-11233400	Enhancers	Spleen	Spleen
15	chr7:11232400-11233400	Active TSS	NHLF	lung
16	chr7:11232400-11233600	Active TSS	Brain Hippocampus Middle	brain
17	chr7:11232400-11233600	Active TSS	Rectal Smooth Muscle	rectum
18	chr7:11232400-11233600	Active TSS	Right Atrium	heart
19	chr7:11232400-11233800	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr7:11232400-11233800	Active TSS	Ovary	ovary
21	chr7:11232400-11233800	Active TSS	Rectal Mucosa Donor 29	rectum
22	chr7:11232400-11234400	Flanking Active TSS	Liver	Liver
23	chr7:11232600-11233400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
24	chr7:11232600-11233400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
25	chr7:11232600-11233400	Active TSS	H9 Cell Line	embryonic stem cell
26	chr7:11232600-11233400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
27	chr7:11232600-11233400	Enhancers	Primary hematopoietic stem cells	blood
28	chr7:11232600-11233400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr7:11232600-11233400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr7:11232600-11233400	Active TSS	Brain Angular Gyrus	brain
31	chr7:11232600-11233400	Active TSS	Brain Cingulate Gyrus	brain
32	chr7:11232600-11233400	Flanking Active TSS	Fetal Intestine Small	intestine
33	chr7:11232600-11233600	Enhancers	Small Intestine	intestine
34	chr7:11232600-11233800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr7:11232800-11233400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr7:11232800-11233400	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr7:11232800-11233400	Active TSS	iPS-15b Cell Line	embryonic stem cell
38	chr7:11232800-11233400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
39	chr7:11232800-11233400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr7:11232800-11233400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr7:11232800-11233400	Flanking Active TSS	Brain Germinal Matrix	brain
42	chr7:11232800-11233400	Active TSS	Colonic Mucosa	Colon
43	chr7:11232800-11233400	Flanking Active TSS	Fetal Muscle Leg	muscle
44	chr7:11232800-11233400	Enhancers	HMEC	breast
45	chr7:11232800-11233600	Active TSS	HUES6 Cell Line	embryonic stem cell
46	chr7:11232800-11233600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
47	chr7:11232800-11233800	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr7:11233000-11233400	Active TSS	H1 Cell Line	embryonic stem cell
49	chr7:11233000-11233400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr7:11233000-11233400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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