Variant report

Variant	rs28797537
Chromosome Location	chr9:108515142-108515143
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10046878	0.90[AFR][1000 genomes]
rs10113972	0.90[AFR][1000 genomes]
rs10115662	0.84[AFR][1000 genomes]
rs10120813	0.84[AFR][1000 genomes]
rs10978207	0.84[AFR][1000 genomes]
rs11506758	0.83[AFR][1000 genomes]
rs12351889	0.87[AFR][1000 genomes]
rs7025764	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv615116	chr9:108468129-108546438	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108498400-108520000	Weak transcription	Fetal Heart	heart
2	chr9:108498400-108520400	Weak transcription	Psoas Muscle	Psoas
3	chr9:108499400-108516000	Weak transcription	Brain Anterior Caudate	brain
4	chr9:108499400-108516000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr9:108509200-108515800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:108510000-108515800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:108510000-108517000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
8	chr9:108510200-108517000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr9:108510400-108515400	Strong transcription	Skeletal Muscle Female	skeletal muscle
10	chr9:108510400-108515800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
11	chr9:108510400-108516400	Weak transcription	HMEC	breast
12	chr9:108510600-108515200	Strong transcription	Ovary	ovary
13	chr9:108510800-108515200	Strong transcription	Duodenum Mucosa	Duodenum
14	chr9:108511000-108515400	Strong transcription	Skeletal Muscle Male	skeletal muscle
15	chr9:108511600-108516400	Weak transcription	Hela-S3	cervix
16	chr9:108511800-108515200	Strong transcription	K562	blood
17	chr9:108511800-108515800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr9:108511800-108516000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr9:108512000-108516000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr9:108512000-108516600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr9:108512400-108516200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr9:108512600-108515200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr9:108513200-108515200	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
24	chr9:108513200-108515200	ZNF genes & repeats	Dnd41	blood
25	chr9:108513200-108515400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr9:108513200-108515400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr9:108513200-108515600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr9:108513400-108515200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
29	chr9:108513400-108515200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
30	chr9:108513400-108515200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr9:108513400-108515200	ZNF genes & repeats	Fetal Intestine Small	intestine
32	chr9:108513400-108515200	Strong transcription	Left Ventricle	heart
33	chr9:108513400-108515400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr9:108513400-108515400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr9:108513400-108515400	ZNF genes & repeats	Aorta	Aorta
36	chr9:108513400-108515600	ZNF genes & repeats	Primary B cells from cord blood	blood
37	chr9:108513400-108515800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr9:108513600-108516000	Weak transcription	HUVEC	blood vessel
39	chr9:108513800-108516600	Weak transcription	Stomach Smooth Muscle	stomach
40	chr9:108513800-108521400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr9:108514000-108520400	Weak transcription	Right Ventricle	heart
42	chr9:108514000-108540000	Weak transcription	HSMMtube	muscle
43	chr9:108514200-108516200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr9:108514200-108516600	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr9:108514200-108517000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr9:108514200-108517400	Weak transcription	Esophagus	oesophagus
47	chr9:108514200-108520400	Weak transcription	Gastric	stomach
48	chr9:108514200-108520400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr9:108514400-108515200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr9:108514800-108515200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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