Variant report

Variant	rs28797867
Chromosome Location	chr4:160573153-160573154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10019063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10213585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10213587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12331014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12332032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17038545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1809956	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1948798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28481755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28525666	0.91[AFR][1000 genomes]
rs28647506	1.00[AMR][1000 genomes]
rs28658483	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28718454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28864078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28882795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35035236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7674218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9999172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv881205	chr4:160516090-160628006	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2755953	chr4:160557413-160626250	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160553600-160576200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160561200-160576000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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