Variant report

Variant	rs28801421
Chromosome Location	chr4:106903203-106903204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13147201	0.85[AFR][1000 genomes]
rs13147392	0.85[AFR][1000 genomes]
rs2156508	0.85[AFR][1000 genomes]
rs2156509	0.85[AFR][1000 genomes]
rs2187357	0.84[AFR][1000 genomes]
rs28788806	0.83[AFR][1000 genomes]
rs28838601	0.84[AFR][1000 genomes]
rs28863615	0.84[AFR][1000 genomes]
rs28877053	0.83[AFR][1000 genomes]
rs34000647	0.85[AFR][1000 genomes]
rs34371905	0.85[AFR][1000 genomes]
rs35363492	0.85[AFR][1000 genomes]
rs4320139	0.81[AFR][1000 genomes]
rs6419173	0.85[AFR][1000 genomes]
rs6533230	0.85[AFR][1000 genomes]
rs6533231	0.82[AFR][1000 genomes]
rs71599076	0.81[AFR][1000 genomes]
rs71599078	0.81[AFR][1000 genomes]
rs7659168	0.83[AFR][1000 genomes]
rs7676845	0.85[AFR][1000 genomes]
rs7677290	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv522792	chr4:106895964-106982793	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs28801421	MGC16169	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106885400-106909800	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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