Variant report

Variant	rs288057
Chromosome Location	chr2:210392711-210392712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11896762	0.81[AMR][1000 genomes]
rs12614974	0.88[CEU][hapmap]
rs12623404	0.88[CEU][hapmap]
rs13025402	0.81[AMR][1000 genomes]
rs16843022	0.84[MEX][hapmap]
rs16843034	0.81[AMR][1000 genomes]
rs7594825	0.89[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834519	chr2:210271017-210400153	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210388400-210402200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:210391000-210394800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:210391600-210396000	Weak transcription	NHLF	lung
4	chr2:210391600-210398600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr2:210391800-210393000	Enhancers	Primary B cells from cord blood	blood
6	chr2:210391800-210393400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:210391800-210395000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr2:210392000-210406000	Weak transcription	Fetal Brain Female	brain
9	chr2:210392400-210405400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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