The 2.0 version of rSNPBase

Variant report

Variant rs28818785
Chromosome Location chr3:42954056-42954057
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:42948400-42954600 Weak transcription NH-A brain
2 chr3:42948600-42954200 Weak transcription Small Intestine intestine
3 chr3:42948600-42955200 Weak transcription Primary T helper naive cells fromperipheralblood blood
4 chr3:42948600-42955600 Weak transcription NHDF-Ad bronchial
5 chr3:42948800-42954600 Weak transcription Primary T helper naive cells from peripheral blood blood
6 chr3:42948800-42954600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
7 chr3:42949000-42954400 Weak transcription Stomach Mucosa stomach
8 chr3:42949000-42954600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
9 chr3:42949200-42955000 Weak transcription Brain Substantia Nigra brain
10 chr3:42949800-42957000 ZNF genes & repeats Ovary ovary
11 chr3:42950400-42954400 Weak transcription Thymus Thymus
12 chr3:42950800-42954400 Weak transcription Colonic Mucosa Colon
13 chr3:42951200-42954600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
14 chr3:42951600-42954400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
15 chr3:42951800-42954200 Weak transcription Fetal Thymus thymus
16 chr3:42951800-42959000 ZNF genes & repeats Fetal Lung lung
17 chr3:42952000-42955400 Strong transcription Brain Cingulate Gyrus brain
18 chr3:42952000-42958800 ZNF genes & repeats Fetal Muscle Leg muscle
19 chr3:42953000-42954200 Weak transcription Aorta Aorta
20 chr3:42953000-42954200 Weak transcription Esophagus oesophagus
21 chr3:42953000-42954200 Weak transcription Lung lung
22 chr3:42953000-42954200 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr3:42953000-42954600 Weak transcription Pancreas Pancrea
24 chr3:42953000-42958800 ZNF genes & repeats Fetal Muscle Trunk muscle
25 chr3:42953200-42954600 Weak transcription Psoas Muscle Psoas
26 chr3:42953400-42954200 Weak transcription Left Ventricle heart
27 chr3:42953400-42954400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr3:42953400-42954400 Weak transcription Cortex derived primary cultured neurospheres brain
29 chr3:42953400-42954400 Weak transcription Duodenum Mucosa Duodenum
30 chr3:42953400-42954400 Weak transcription Placenta Placenta
31 chr3:42953400-42954400 Weak transcription Rectal Smooth Muscle rectum
32 chr3:42953400-42954600 Weak transcription Brain Anterior Caudate brain
33 chr3:42953400-42954600 Weak transcription Brain Hippocampus Middle brain
34 chr3:42953400-42954600 Weak transcription Rectal Mucosa Donor 29 rectum
35 chr3:42953400-42954600 Weak transcription Right Ventricle heart
36 chr3:42953400-42954600 Weak transcription Osteobl bone
37 chr3:42953400-42955200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr3:42953600-42954200 Weak transcription Fetal Stomach stomach
39 chr3:42953600-42954400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr3:42953600-42954400 Weak transcription Breast Myoepithelial Primary Cells Breast
41 chr3:42953600-42954400 Weak transcription Primary hematopoietic stem cells blood
42 chr3:42953600-42954400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr3:42953600-42954400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
44 chr3:42953600-42954400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
45 chr3:42953600-42954400 Weak transcription Adipose Nuclei Adipose
46 chr3:42953600-42954400 Weak transcription Liver Liver
47 chr3:42953600-42954400 Weak transcription Brain Germinal Matrix brain
48 chr3:42953600-42954400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
49 chr3:42953600-42954400 Weak transcription Duodenum Smooth Muscle Duodenum
50 chr3:42953600-42954400 Weak transcription Placenta Amnion Placenta Amnion

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Last update: Aug 31, 2015