Variant report

Variant	rs2881961
Chromosome Location	chr7:7742056-7742057
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:7731359..7733011-chr7:7740731..7743536,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10262410	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10263415	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10264890	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10277945	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11508478	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13234728	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2108003	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4140802	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4140805	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6966726	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6967126	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7805143	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv606042	chr7:7427535-7876466	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv887477	chr7:7531819-7810122	Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1032670	chr7:7535515-8017077	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv8043	chr7:7589195-7862802	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv887478	chr7:7670718-7917360	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
7	nsv887479	chr7:7681131-7779091	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv887480	chr7:7681131-7917360	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv887481	chr7:7681576-7779324	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv887482	chr7:7682439-7785047	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv887483	chr7:7682439-7798217	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
12	nsv887484	chr7:7692483-7769363	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv887485	chr7:7692483-7917360	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
14	nsv606045	chr7:7704889-7755491	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	nsv887486	chr7:7712498-7785047	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
16	esv2752177	chr7:7729247-8177689	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
17	nsv1026564	chr7:7734846-7897847	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
18	nsv887487	chr7:7740914-7802561	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:7706800-7743200	Weak transcription	Gastric	stomach
2	chr7:7717800-7749000	Weak transcription	Fetal Intestine Small	intestine
3	chr7:7721600-7748800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr7:7722000-7750600	Weak transcription	Primary B cells from cord blood	blood
5	chr7:7722600-7744400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:7722600-7745600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr7:7722800-7742400	Weak transcription	Pancreas	Pancrea
8	chr7:7726800-7745800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr7:7727800-7748800	Weak transcription	Small Intestine	intestine
10	chr7:7729000-7743400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:7735400-7742400	Weak transcription	Ovary	ovary
12	chr7:7735400-7746600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr7:7735400-7746800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr7:7735600-7744400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr7:7736400-7742400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr7:7736400-7746600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr7:7736600-7743200	Weak transcription	Psoas Muscle	Psoas
18	chr7:7736600-7744600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr7:7736800-7744400	Weak transcription	NHEK	skin
20	chr7:7736800-7745400	Weak transcription	HSMM	muscle
21	chr7:7736800-7747000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr7:7736800-7748600	Weak transcription	Stomach Mucosa	stomach
23	chr7:7737000-7742400	Weak transcription	HepG2	liver
24	chr7:7737000-7746200	Weak transcription	HSMMtube	muscle
25	chr7:7737000-7746400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr7:7737000-7746800	Weak transcription	Aorta	Aorta
27	chr7:7737400-7745600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr7:7737600-7747000	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr7:7737600-7778800	Weak transcription	Primary hematopoietic stem cells	blood
30	chr7:7739000-7743200	Weak transcription	Left Ventricle	heart
31	chr7:7739400-7742200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr7:7739400-7742400	Weak transcription	Rectal Smooth Muscle	rectum
33	chr7:7739400-7744600	Weak transcription	NHLF	lung
34	chr7:7739400-7745400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr7:7739400-7749000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr7:7739600-7742400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr7:7739600-7743800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr7:7739600-7747200	Weak transcription	Osteobl	bone
39	chr7:7739600-7747400	Weak transcription	Colon Smooth Muscle	Colon
40	chr7:7739600-7748400	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr7:7739800-7742400	Weak transcription	Stomach Smooth Muscle	stomach
42	chr7:7739800-7744600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr7:7739800-7746400	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr7:7740000-7742400	Weak transcription	Adipose Nuclei	Adipose
45	chr7:7740000-7742400	Weak transcription	Right Atrium	heart
46	chr7:7740000-7742600	Enhancers	GM12878-XiMat	blood
47	chr7:7740000-7759000	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr7:7740600-7744600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr7:7741000-7742600	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr7:7741600-7742800	Enhancers	NHDF-Ad	bronchial

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