Variant report

Variant	rs2882015
Chromosome Location	chr7:8068877-8068878
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:8068288..8070626-chr7:8070654..8072447,2	K562	blood:
2	chr7:8063593..8066315-chr7:8067381..8070107,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11981425	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13245462	1.00[CEU][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17142375	0.91[CEU][hapmap];0.82[AMR][1000 genomes]
rs34261596	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34395699	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34466770	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60466842	0.81[AMR][1000 genomes]
rs6968802	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7805751	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	esv2752177	chr7:7729247-8177689	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv917172	chr7:7854632-8807385	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv518779	chr7:8055664-8077359	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1793794	chr7:8064509-8078802	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:8036400-8077400	Weak transcription	Right Ventricle	heart
2	chr7:8036600-8074600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:8041600-8095000	Weak transcription	Gastric	stomach
4	chr7:8041800-8075400	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:8043000-8099200	Weak transcription	Colon Smooth Muscle	Colon
6	chr7:8044600-8074400	Weak transcription	Brain Angular Gyrus	brain
7	chr7:8046800-8074400	Weak transcription	Brain Substantia Nigra	brain
8	chr7:8047400-8075600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr7:8047600-8108200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr7:8058800-8069400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr7:8061200-8070000	Weak transcription	Stomach Mucosa	stomach
12	chr7:8063600-8069000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
13	chr7:8064400-8096200	Weak transcription	NHLF	lung
14	chr7:8065000-8074400	Weak transcription	Aorta	Aorta
15	chr7:8065000-8076800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr7:8065000-8095000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr7:8065000-8108600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr7:8066400-8070800	Weak transcription	Dnd41	blood
19	chr7:8066400-8074200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr7:8066400-8074400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr7:8066400-8074400	Weak transcription	Primary T cells from cord blood	blood
22	chr7:8066400-8074400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr7:8066400-8074400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr7:8066400-8074400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr7:8066400-8074600	Weak transcription	Lung	lung
26	chr7:8066400-8075200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr7:8066400-8075200	Weak transcription	Esophagus	oesophagus
28	chr7:8066400-8075600	Weak transcription	Fetal Kidney	kidney
29	chr7:8066400-8090800	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr7:8066400-8096600	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr7:8066400-8127600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr7:8066600-8069600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr7:8066600-8075200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr7:8066600-8075200	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr7:8066600-8077000	Weak transcription	Fetal Heart	heart
36	chr7:8066600-8082000	Weak transcription	Osteobl	bone
37	chr7:8066600-8099800	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr7:8066600-8126000	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr7:8066800-8069400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr7:8066800-8074400	Weak transcription	Ovary	ovary
41	chr7:8066800-8074400	Weak transcription	Spleen	Spleen
42	chr7:8066800-8074600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr7:8066800-8074600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr7:8066800-8074600	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr7:8066800-8074800	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr7:8066800-8074800	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr7:8066800-8074800	Weak transcription	Adipose Nuclei	Adipose
48	chr7:8066800-8075000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr7:8066800-8075400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr7:8066800-8075400	Weak transcription	Liver	Liver

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