Variant report

Variant	rs28823671
Chromosome Location	chr4:129719864-129719865
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10008441	1.00[AMR][1000 genomes]
rs10014385	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10015538	1.00[AMR][1000 genomes]
rs10026447	1.00[AMR][1000 genomes]
rs10028545	1.00[AMR][1000 genomes]
rs9307610	1.00[AMR][1000 genomes]
rs9991702	1.00[AMR][1000 genomes]
rs9996611	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1020801	chr4:129658178-129778086	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv537248	chr4:129658178-129778086	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129715400-129722800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:129715600-129720000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr4:129715600-129721000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:129715600-129721000	Weak transcription	Fetal Intestine Large	intestine
5	chr4:129715600-129721000	Weak transcription	Fetal Intestine Small	intestine
6	chr4:129715600-129721200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr4:129715600-129721600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:129715800-129721000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr4:129715800-129721200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:129715800-129721200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr4:129718600-129722000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:129718800-129721400	Weak transcription	A549	lung
13	chr4:129719800-129720200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr4:129719800-129726200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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