The 2.0 version of rSNPBase

Variant report

Variant rs28825181
Chromosome Location chr4:53480471-53480472
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:109 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:53451800-53501400 Weak transcription Small Intestine intestine
2 chr4:53453000-53485400 Weak transcription Psoas Muscle Psoas
3 chr4:53454800-53485400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr4:53456000-53506400 Weak transcription HUVEC blood vessel
5 chr4:53456600-53482000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
6 chr4:53458800-53485000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
7 chr4:53459000-53483600 Weak transcription K562 blood
8 chr4:53461400-53481800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
9 chr4:53461400-53488200 Weak transcription NHDF-Ad bronchial
10 chr4:53461600-53481600 Weak transcription Pancreatic Islets Pancreatic Islet
11 chr4:53463000-53507200 Weak transcription Colon Smooth Muscle Colon
12 chr4:53463600-53483600 Weak transcription Fetal Brain Male brain
13 chr4:53463800-53480800 Weak transcription Dnd41 blood
14 chr4:53463800-53483800 Weak transcription Primary T cells fromperipheralblood blood
15 chr4:53463800-53494000 Weak transcription NHLF lung
16 chr4:53464200-53488600 Weak transcription NHEK skin
17 chr4:53464200-53494800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
18 chr4:53464200-53523600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
19 chr4:53468200-53485000 Weak transcription Stomach Mucosa stomach
20 chr4:53468200-53510200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
21 chr4:53468400-53485200 Weak transcription Brain Substantia Nigra brain
22 chr4:53468600-53493600 Weak transcription Primary B cells from peripheral blood blood
23 chr4:53468600-53497600 Weak transcription Rectal Mucosa Donor 29 rectum
24 chr4:53469800-53485000 Weak transcription iPS-15b Cell Line embryonic stem cell
25 chr4:53472400-53483600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
26 chr4:53472600-53499000 Weak transcription Rectal Smooth Muscle rectum
27 chr4:53473000-53506800 Weak transcription Primary T cells from cord blood blood
28 chr4:53473600-53491400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
29 chr4:53473600-53507200 Weak transcription Osteobl bone
30 chr4:53473800-53490600 Weak transcription HSMMtube muscle
31 chr4:53474200-53485000 Weak transcription Brain Hippocampus Middle brain
32 chr4:53475000-53501200 Weak transcription Gastric stomach
33 chr4:53475800-53484800 Weak transcription Fetal Adrenal Gland Adrenal Gland
34 chr4:53475800-53485600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
35 chr4:53476000-53481400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
36 chr4:53476000-53485200 Weak transcription Brain Angular Gyrus brain
37 chr4:53476000-53485400 Weak transcription H9 Cell Line embryonic stem cell
38 chr4:53476000-53485400 Weak transcription Skeletal Muscle Male skeletal muscle
39 chr4:53476000-53488800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr4:53476000-53489000 Weak transcription Stomach Smooth Muscle stomach
41 chr4:53476000-53491400 Weak transcription Brain Inferior Temporal Lobe brain
42 chr4:53476000-53494200 Weak transcription Lung lung
43 chr4:53476000-53496200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
44 chr4:53476000-53502200 Weak transcription Pancreas Pancrea
45 chr4:53476000-53507400 Weak transcription HSMM muscle
46 chr4:53476200-53481600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr4:53476200-53483600 Weak transcription Primary T helper naive cells from peripheral blood blood
48 chr4:53476200-53484200 Weak transcription Brain Cingulate Gyrus brain
49 chr4:53476200-53489000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
50 chr4:53476600-53484600 Weak transcription Brain Germinal Matrix brain

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Last update: Aug 31, 2015