Variant report
| Variant | rs2882670 |
|---|---|
| Chromosome Location | chr12:30613123-30613124 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:30608258..30610479-chr12:30611137..30614676,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10771710 | 0.97[ASN][1000 genomes] |
| rs10771712 | 0.97[ASN][1000 genomes] |
| rs10771717 | 0.97[ASN][1000 genomes] |
| rs10771719 | 0.97[ASN][1000 genomes] |
| rs10843753 | 0.97[ASN][1000 genomes] |
| rs11050893 | 0.97[ASN][1000 genomes] |
| rs12298590 | 0.93[ASN][1000 genomes] |
| rs1500109 | 0.97[ASN][1000 genomes] |
| rs1500110 | 0.97[ASN][1000 genomes] |
| rs1506368 | 0.97[ASN][1000 genomes] |
| rs1506370 | 0.90[ASN][1000 genomes] |
| rs1580964 | 0.97[ASN][1000 genomes] |
| rs1846649 | 0.97[ASN][1000 genomes] |
| rs1876181 | 0.90[ASN][1000 genomes] |
| rs1876182 | 0.90[ASN][1000 genomes] |
| rs2062999 | 0.97[ASN][1000 genomes] |
| rs4488290 | 0.97[ASN][1000 genomes] |
| rs4598746 | 0.97[ASN][1000 genomes] |
| rs4931329 | 0.97[ASN][1000 genomes] |
| rs4931332 | 0.97[ASN][1000 genomes] |
| rs4931334 | 0.97[ASN][1000 genomes] |
| rs4931335 | 0.97[ASN][1000 genomes] |
| rs7312790 | 0.90[ASN][1000 genomes] |
| rs7952779 | 0.97[ASN][1000 genomes] |
| rs7958112 | 0.90[ASN][1000 genomes] |
| rs7973080 | 0.93[ASN][1000 genomes] |
| rs7973114 | 0.90[ASN][1000 genomes] |
| rs7973830 | 0.95[ASN][1000 genomes] |
| rs885106 | 0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3343291 | chr12:30455597-30992837 | Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 48 gene(s) | inside rSNPs | diseases |
| 2 | nsv1045252 | chr12:30583170-30621743 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1050233 | chr12:30590071-30670919 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs2882670 | C12orf70 | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:30610800-30613600 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
