Variant report

Variant	rs2882732
Chromosome Location	chr2:190010453-190010454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:190010189..190015498-chr2:190084856..190090227,6	MCF-7	breast:
2	chr2:190009672..190012022-chr2:190013426..190016252,2	K562	blood:
3	chr2:190008421..190011287-chr2:190151088..190152689,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12614568	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12621913	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4128539	0.88[CHB][hapmap]
rs73034872	1.00[AMR][1000 genomes]
rs73036538	1.00[EUR][1000 genomes]
rs73978847	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73978877	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875613	chr2:189999011-190324685	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189968600-190012000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr2:189981400-190014800	Weak transcription	Fetal Stomach	stomach
3	chr2:189984000-190016800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr2:189993800-190017000	Weak transcription	Ovary	ovary
5	chr2:189994200-190010600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr2:190000400-190013600	Weak transcription	Left Ventricle	heart
7	chr2:190003600-190014600	Weak transcription	Colon Smooth Muscle	Colon
8	chr2:190006600-190011800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:190007800-190010600	Strong transcription	HSMM	muscle
10	chr2:190008000-190014800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:190009000-190011400	Weak transcription	HSMMtube	muscle
12	chr2:190009000-190012000	Enhancers	A549	lung
13	chr2:190009000-190016000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:190009200-190012200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr2:190009200-190014400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr2:190009400-190014800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr2:190009600-190010800	Enhancers	NHDF-Ad	bronchial
18	chr2:190009600-190013200	Genic enhancers	Osteobl	bone
19	chr2:190009600-190014800	Weak transcription	Aorta	Aorta
20	chr2:190009800-190010600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr2:190009800-190010800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr2:190009800-190011000	Weak transcription	NHLF	lung
23	chr2:190009800-190011400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr2:190009800-190013800	Weak transcription	Adipose Nuclei	Adipose
25	chr2:190009800-190014600	Weak transcription	NH-A	brain
26	chr2:190009800-190017200	Weak transcription	Fetal Muscle Leg	muscle
27	chr2:190010000-190011000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr2:190010200-190010600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr2:190010200-190013200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr2:190010200-190013800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr2:190010400-190011600	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links