Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC090186.1-6	chr8:52860662-52862694	NONHSAT126544

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10104555	0.94[EUR][1000 genomes]
rs10106132	0.88[EUR][1000 genomes]
rs10106734	0.81[EUR][1000 genomes]
rs10111727	0.94[EUR][1000 genomes]
rs11984688	0.81[EUR][1000 genomes]
rs11990932	0.81[EUR][1000 genomes]
rs16916958	0.94[EUR][1000 genomes]
rs1996261	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4242473	0.88[EUR][1000 genomes]
rs4242477	0.88[EUR][1000 genomes]
rs4257997	0.88[EUR][1000 genomes]
rs4873599	0.88[EUR][1000 genomes]
rs4873612	0.81[EUR][1000 genomes]
rs55730191	0.94[EUR][1000 genomes]
rs55791360	0.81[EUR][1000 genomes]
rs56034922	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56109937	0.81[EUR][1000 genomes]
rs6997032	0.88[EUR][1000 genomes]
rs6997972	0.81[EUR][1000 genomes]
rs73583635	0.94[EUR][1000 genomes]
rs73583640	0.94[EUR][1000 genomes]
rs73592250	0.94[EUR][1000 genomes]
rs7845506	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1018429	chr8:52411443-52878946	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1034856	chr8:52411443-52886765	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52831800-52863400	Weak transcription	Aorta	Aorta
2	chr8:52850200-52868000	Weak transcription	Primary B cells from cord blood	blood
3	chr8:52852000-52870000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr8:52852200-52866000	Weak transcription	Left Ventricle	heart
5	chr8:52852600-52867600	Weak transcription	Fetal Kidney	kidney
6	chr8:52852800-52867000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:52856800-52865200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr8:52859600-52863800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr8:52859800-52866600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr8:52860400-52864400	Weak transcription	Pancreas	Pancrea
11	chr8:52861200-52863000	Weak transcription	Adipose Nuclei	Adipose
12	chr8:52861200-52866600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr8:52861200-52870000	Weak transcription	Fetal Muscle Leg	muscle
14	chr8:52862200-52863000	Enhancers	Brain Cingulate Gyrus	brain
15	chr8:52862400-52863000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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