Variant report

Variant	rs28830583
Chromosome Location	chr8:113833411-113833412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1026488	0.84[ASN][1000 genomes]
rs1026489	0.84[ASN][1000 genomes]
rs11787239	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11986076	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13248739	0.91[ASN][1000 genomes]
rs13253012	0.98[EUR][1000 genomes]
rs13254460	0.85[ASN][1000 genomes]
rs13255029	0.85[ASN][1000 genomes]
rs13256271	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13256724	0.91[ASN][1000 genomes]
rs13257842	0.85[ASN][1000 genomes]
rs13258944	0.85[ASN][1000 genomes]
rs13259298	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13261160	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13261301	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13264919	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13266975	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13267779	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13275398	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13276278	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1380136	0.87[ASN][1000 genomes]
rs1380139	0.84[ASN][1000 genomes]
rs1380140	0.87[ASN][1000 genomes]
rs1380141	0.84[ASN][1000 genomes]
rs1458999	0.87[ASN][1000 genomes]
rs1459006	0.84[ASN][1000 genomes]
rs1813415	0.87[ASN][1000 genomes]
rs1947633	0.84[ASN][1000 genomes]
rs1993607	0.84[ASN][1000 genomes]
rs2045540	0.84[ASN][1000 genomes]
rs2125553	0.84[ASN][1000 genomes]
rs2216891	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231278	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231280	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231282	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231283	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231284	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs231287	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs231288	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231306	0.84[ASN][1000 genomes]
rs231313	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs231314	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs231315	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231317	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231320	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231321	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231322	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2511524	0.84[ASN][1000 genomes]
rs2511529	0.84[ASN][1000 genomes]
rs2511530	0.84[ASN][1000 genomes]
rs370168	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs373880	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3950980	0.87[ASN][1000 genomes]
rs4028265	0.84[ASN][1000 genomes]
rs4876298	0.87[ASN][1000 genomes]
rs4876499	0.87[ASN][1000 genomes]
rs4876501	0.84[ASN][1000 genomes]
rs56248947	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7013313	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv534270	chr8:113585830-113979075	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
3	esv2754315	chr8:113736824-114048824	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv524089	chr8:113761143-113852777	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv891326	chr8:113777669-114091732	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv891327	chr8:113828980-114109342	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113832800-113834200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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