Variant report

Variant	rs28836529
Chromosome Location	chr2:116135224-116135225
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10864939	0.82[AFR][1000 genomes]
rs11674259	0.81[AFR][1000 genomes]
rs11674301	0.83[AFR][1000 genomes]
rs11678535	0.80[AMR][1000 genomes]
rs12621553	0.80[AMR][1000 genomes]
rs17823359	0.82[AFR][1000 genomes]
rs1812951	0.83[AFR][1000 genomes]
rs28850614	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs28855712	0.85[AMR][1000 genomes]
rs35668280	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874918	chr2:116098665-116183946	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
2	nsv874919	chr2:116130709-116219686	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116133800-116139400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:116134000-116140000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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