Variant report
| Variant | rs28836833 |
|---|---|
| Chromosome Location | chr21:40253155-40253156 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11701301 | 1.00[ASN][1000 genomes] |
| rs11911369 | 0.81[ASN][1000 genomes] |
| rs17230954 | 0.96[ASN][1000 genomes] |
| rs17230961 | 0.96[ASN][1000 genomes] |
| rs2298560 | 0.92[ASN][1000 genomes] |
| rs2410062 | 0.96[ASN][1000 genomes] |
| rs2836715 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2836717 | 0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2836720 | 0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2836724 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28508188 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28817686 | 0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs467698 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs467806 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57740627 | 0.81[ASN][1000 genomes] |
| rs59086904 | 1.00[ASN][1000 genomes] |
| rs714780 | 0.81[ASN][1000 genomes] |
| rs7278693 | 0.96[ASN][1000 genomes] |
| rs7279299 | 0.96[ASN][1000 genomes] |
| rs7283433 | 0.96[ASN][1000 genomes] |
| rs73450548 | 0.81[ASN][1000 genomes] |
| rs73450552 | 0.81[ASN][1000 genomes] |
| rs8127274 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9979509 | 0.96[AFR][1000 genomes];0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1062425 | chr21:40172471-40380976 | Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 47 gene(s) | inside rSNPs | diseases |
| 2 | nsv544442 | chr21:40172471-40380976 | Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 47 gene(s) | inside rSNPs | diseases |
| 3 | nsv587477 | chr21:40228920-40512004 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionChromatin interactive regionlncRNA | 35 gene(s) | inside rSNPs | diseases |
| 4 | nsv587478 | chr21:40243459-40275033 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr21:40247800-40259400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
