Variant report

Variant	rs28839506
Chromosome Location	chr8:89412716-89412717
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr8:89412418-89412741	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
RNA5SP272	TF binding region

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10093191	0.93[AFR][1000 genomes]
rs10095262	0.82[AFR][1000 genomes]
rs10095499	0.82[AFR][1000 genomes]
rs10096195	0.81[AFR][1000 genomes]
rs10098834	0.82[AFR][1000 genomes]
rs10099075	0.82[AFR][1000 genomes]
rs10099233	0.95[AFR][1000 genomes]
rs10099461	0.95[AFR][1000 genomes]
rs10103178	0.92[AFR][1000 genomes]
rs10103336	0.94[AFR][1000 genomes]
rs10103474	0.96[AFR][1000 genomes]
rs10110453	0.82[AFR][1000 genomes]
rs10112810	0.82[AFR][1000 genomes]
rs10113214	0.82[AFR][1000 genomes]
rs16882035	0.95[AFR][1000 genomes]
rs16882334	0.86[AFR][1000 genomes]
rs16882368	0.82[AFR][1000 genomes]
rs16882408	0.82[AFR][1000 genomes]
rs28403966	0.84[AFR][1000 genomes]
rs28414285	0.86[AFR][1000 genomes]
rs28453085	0.87[AFR][1000 genomes]
rs28581869	0.86[AFR][1000 genomes]
rs28758406	0.87[AFR][1000 genomes]
rs28768402	0.98[AFR][1000 genomes]
rs57771217	0.98[AFR][1000 genomes]
rs58723841	0.87[AFR][1000 genomes]
rs59107062	0.95[AFR][1000 genomes]
rs59425875	0.98[AFR][1000 genomes]
rs59430846	0.98[AFR][1000 genomes]
rs73279213	0.80[AFR][1000 genomes]
rs73279219	0.91[AFR][1000 genomes]
rs73279224	0.95[AFR][1000 genomes]
rs73279231	0.95[AFR][1000 genomes]
rs73289232	0.86[AFR][1000 genomes]
rs9297468	0.82[AFR][1000 genomes]
rs9297469	0.82[AFR][1000 genomes]
rs9297470	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1019111	chr8:89186908-89475460	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv891171	chr8:89342944-89439469	Enhancers Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1019671	chr8:89393818-89443392	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1029978	chr8:89396644-89443392	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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