Variant report

Variant	rs28842196
Chromosome Location	chr3:28594311-28594312
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10042504	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10071725	0.83[AMR][1000 genomes]
rs10079493	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11959569	0.84[AMR][1000 genomes]
rs13174293	0.81[AMR][1000 genomes]
rs13180767	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2036902	0.80[AFR][1000 genomes]
rs2137134	0.81[AMR][1000 genomes]
rs34741488	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs34749302	0.86[AMR][1000 genomes]
rs3849669	0.83[AMR][1000 genomes]
rs3860732	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4030571	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4031137	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4398636	0.83[AMR][1000 genomes]
rs4637546	0.81[AMR][1000 genomes]
rs57137858	0.84[AMR][1000 genomes]
rs62386175	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6450056	0.81[AMR][1000 genomes]
rs6450063	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6868677	0.85[AMR][1000 genomes]
rs7700537	0.82[AMR][1000 genomes]
rs7732000	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv876650	chr3:28427029-28613602	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1015015	chr3:28461972-28728494	Bivalent/Poised TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv916364	chr3:28468275-29146280	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv590010	chr3:28469830-28727214	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1004457	chr3:28541307-28595311	Strong transcription Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28589600-28598200	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links