Variant report

Variant	rs28843724
Chromosome Location	chr15:49892981-49892982
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49891497..49893878-chr15:49905999..49908398,2	K562	blood:

Variant related genes	Relation type
ENSG00000166262	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10519233	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11070707	0.86[EUR][1000 genomes]
rs12901416	0.86[EUR][1000 genomes]
rs12902107	0.86[EUR][1000 genomes]
rs12902794	0.86[EUR][1000 genomes]
rs13329455	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1354918	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1395900	0.86[EUR][1000 genomes]
rs1546424	0.87[EUR][1000 genomes]
rs1546425	0.86[EUR][1000 genomes]
rs1588127	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17402569	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17404262	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17480434	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17481696	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17483139	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1814711	0.81[EUR][1000 genomes]
rs2413947	0.84[EUR][1000 genomes]
rs2413958	0.81[EUR][1000 genomes]
rs28393768	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28408092	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28409376	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28430272	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28465200	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28484276	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28492008	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28516445	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28568399	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28635979	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28669217	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28671247	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28798135	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3210227	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7178101	0.81[EUR][1000 genomes]
rs8034473	0.86[EUR][1000 genomes]
rs8038373	0.82[EUR][1000 genomes]
rs8040716	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs967892	0.84[EUR][1000 genomes]
rs9920574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9920705	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569392	chr15:49789413-49926300	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv431388	chr15:49835663-49997483	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49856200-49897400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr15:49866800-49897600	Weak transcription	Ovary	ovary
3	chr15:49892000-49893000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:49892600-49893200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet

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