Variant report

Variant	rs28843778
Chromosome Location	chr12:68347817-68347818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10878706	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10878712	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10878713	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10878715	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10878718	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10878719	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10878720	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11176948	0.88[ASN][1000 genomes]
rs11176949	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11176954	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11176959	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11176968	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11176969	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11176972	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11176978	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11176980	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11176983	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11176986	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11176989	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11176991	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11176992	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11176993	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11176995	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11613229	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11614985	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12368120	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12370235	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12370243	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12422467	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12423203	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12424418	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17104564	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2215071	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2215072	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2302627	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3411149	chr12:68066948-68435533	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1039638	chr12:68293351-68399871	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv899219	chr12:68293419-68353649	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:68341400-68351000	Weak transcription	Psoas Muscle	Psoas

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