Variant report

Variant	rs28845538
Chromosome Location	chr6:79476955-79476956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2202658	0.83[EUR][1000 genomes]
rs56159137	0.83[EUR][1000 genomes]
rs72897280	0.87[EUR][1000 genomes]
rs72899160	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899162	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448551	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3391082	chr6:79443282-79504068	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
2	esv3433815	chr6:79443282-79536957	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79476800-79477200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:79476800-79477400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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