Variant report
| Variant | rs28848860 |
|---|---|
| Chromosome Location | chr5:74429425-74429426 |
| allele | A/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs12991278 | 0.96[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs12999799 | 0.89[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs12999852 | 0.89[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs13005607 | 0.89[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs13006867 | 0.96[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs13013842 | 0.84[AFR][1000 genomes] |
| rs13013911 | 0.96[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs13017636 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs13028388 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13033584 | 0.81[AFR][1000 genomes] |
| rs13035486 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1424802 | 0.87[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs2222686 | 0.87[AFR][1000 genomes] |
| rs34868438 | 0.89[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs35872223 | 0.81[AMR][1000 genomes] |
| rs4522646 | 0.84[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs55855257 | 0.90[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs55962941 | 0.81[AMR][1000 genomes] |
| rs56314551 | 0.89[AFR][1000 genomes] |
| rs71411585 | 0.87[AFR][1000 genomes] |
| rs71411587 | 0.96[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs71411588 | 0.96[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs71411589 | 0.96[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs941055 | 0.90[AFR][1000 genomes] |
| rs941056 | 0.96[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs941057 | 0.96[AFR][1000 genomes];0.81[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018865 | chr5:74246293-74494552 | Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv882189 | chr5:74356857-74478078 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1016610 | chr5:74403611-74627654 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:74427600-74434600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
