Variant report

Variant	rs28850130
Chromosome Location	chr4:21488963-21488964
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10014209	0.92[EUR][1000 genomes]
rs1460484	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16871243	0.93[ASN][1000 genomes]
rs1903320	0.92[EUR][1000 genomes]
rs358584	0.83[EUR][1000 genomes]
rs358585	0.83[EUR][1000 genomes]
rs56989378	0.90[ASN][1000 genomes]
rs57335220	0.90[ASN][1000 genomes]
rs60294689	0.90[ASN][1000 genomes]
rs73105830	0.90[ASN][1000 genomes]
rs73105834	0.90[ASN][1000 genomes]
rs73105836	0.90[ASN][1000 genomes]
rs73105840	0.90[ASN][1000 genomes]
rs73105849	0.90[ASN][1000 genomes]
rs73105853	0.90[ASN][1000 genomes]
rs73105855	0.90[ASN][1000 genomes]
rs73105858	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv829879	chr4:21418568-21611002	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv998481	chr4:21421945-21608805	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21487600-21492600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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