Variant report

Variant	rs288505
Chromosome Location	chr3:69628508-69628509
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1498853	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs288492	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs288494	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs288496	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs288502	0.82[ASN][1000 genomes]
rs288511	0.83[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs288512	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs288513	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs288514	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4855421	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007730	chr3:69355932-69730587	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3426797	chr3:69433086-69777229	Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1004470	chr3:69597148-69728231	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1015103	chr3:69619879-69712504	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69628000-69629400	Enhancers	Fetal Muscle Leg	muscle
2	chr3:69628000-69629600	Enhancers	Fetal Brain Male	brain
3	chr3:69628200-69629000	Enhancers	Adipose Nuclei	Adipose
4	chr3:69628200-69629600	Enhancers	Fetal Brain Female	brain
5	chr3:69628200-69629800	Enhancers	Brain Germinal Matrix	brain
6	chr3:69628400-69628600	Enhancers	Brain Angular Gyrus	brain
7	chr3:69628400-69628600	Enhancers	Brain Hippocampus Middle	brain
8	chr3:69628400-69628600	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr3:69628400-69628800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:69628400-69628800	Enhancers	Fetal Kidney	kidney
11	chr3:69628400-69629400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr3:69628400-69629400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:69628400-69629600	Flanking Active TSS	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links