Variant report

Variant	rs28853315
Chromosome Location	chr5:147105672-147105673
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12172994	0.95[EUR][1000 genomes]
rs17107218	0.95[EUR][1000 genomes]
rs17107219	0.95[EUR][1000 genomes]
rs68043636	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3444248	chr5:147094808-147116217	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1021356	chr5:147103627-147310531	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147078600-147146000	Weak transcription	Primary T cells from cord blood	blood
2	chr5:147101000-147106200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr5:147101600-147114400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:147101800-147109800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:147102000-147109400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:147102000-147109600	Weak transcription	Brain Germinal Matrix	brain
7	chr5:147102000-147111600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr5:147102000-147112000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:147102200-147114400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr5:147102600-147111600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr5:147103600-147110400	Weak transcription	Brain Angular Gyrus	brain
12	chr5:147103600-147110400	Weak transcription	Brain Hippocampus Middle	brain
13	chr5:147103600-147111600	Weak transcription	Fetal Brain Female	brain
14	chr5:147103600-147121800	Weak transcription	Fetal Brain Male	brain
15	chr5:147105600-147106000	Enhancers	Brain Substantia Nigra	brain
16	chr5:147105600-147106600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr5:147105600-147107200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr5:147105600-147109600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr5:147105600-147114200	Weak transcription	Primary hematopoietic stem cells	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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