Variant report

Variant	rs2885445
Chromosome Location	chr1:119837466-119837467
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:119836003..119837992-chr1:119839451..119841888,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10754394	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10802089	0.93[EUR][1000 genomes]
rs10923796	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1409056	0.81[EUR][1000 genomes]
rs1418024	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1418025	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1891224	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2153738	0.93[JPT][hapmap]
rs2226102	0.93[EUR][1000 genomes]
rs2243981	0.93[EUR][1000 genomes]
rs2253988	0.93[EUR][1000 genomes]
rs2254528	0.93[EUR][1000 genomes]
rs2254664	0.93[EUR][1000 genomes]
rs2257016	0.93[EUR][1000 genomes]
rs2265628	0.93[EUR][1000 genomes]
rs6428814	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6672571	0.93[EUR][1000 genomes]
rs699771	0.92[JPT][hapmap];0.93[EUR][1000 genomes]
rs838512	0.85[JPT][hapmap]
rs838513	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs838514	0.93[JPT][hapmap];0.93[EUR][1000 genomes]
rs838515	0.93[JPT][hapmap];0.93[EUR][1000 genomes]
rs838516	0.92[JPT][hapmap];0.93[EUR][1000 genomes]
rs838517	0.93[EUR][1000 genomes]
rs838519	0.93[EUR][1000 genomes]
rs838520	0.93[EUR][1000 genomes]
rs838527	0.93[JPT][hapmap]
rs866788	0.93[JPT][hapmap];0.93[EUR][1000 genomes]
rs947422	0.93[EUR][1000 genomes]
rs947423	0.93[EUR][1000 genomes]
rs947424	0.93[EUR][1000 genomes]
rs947425	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932014	chr1:119476480-120471049	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
2	nsv831192	chr1:119671172-119843226	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv917091	chr1:119688975-120023222	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv34089	chr1:119752112-120072961	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv547615	chr1:119828542-119875730	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:119823000-119840600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:119829400-119838200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:119835800-119838000	Enhancers	H9 Cell Line	embryonic stem cell
4	chr1:119835800-119838400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:119835800-119839000	Enhancers	Fetal Kidney	kidney
6	chr1:119836000-119838200	Enhancers	HepG2	liver
7	chr1:119836200-119837600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:119836200-119837800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:119836200-119838000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:119836200-119838000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr1:119836200-119838200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr1:119836400-119837800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr1:119836400-119837800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr1:119836400-119837800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr1:119836400-119838000	Enhancers	H1 Cell Line	embryonic stem cell
16	chr1:119836400-119838000	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr1:119836400-119838200	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr1:119836400-119838200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr1:119836600-119837800	Enhancers	Duodenum Mucosa	Duodenum
20	chr1:119836600-119838200	Enhancers	Dnd41	blood
21	chr1:119836800-119837600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
22	chr1:119836800-119838000	Enhancers	Primary T cells from cord blood	blood
23	chr1:119837000-119837800	Enhancers	Fetal Thymus	thymus
24	chr1:119837000-119838000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
25	chr1:119837000-119838000	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr1:119837000-119838000	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr1:119837000-119846200	Weak transcription	Liver	Liver
28	chr1:119837200-119837800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr1:119837200-119837800	Enhancers	Fetal Lung	lung
30	chr1:119837200-119838000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr1:119837200-119838000	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr1:119837200-119838000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr1:119837200-119838000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr1:119837200-119838200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr1:119837200-119841200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr1:119837200-119841400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr1:119837400-119837800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
38	chr1:119837400-119837800	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr1:119837400-119838400	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr1:119837400-119838400	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr1:119837400-119838400	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links