Variant report

Variant	rs2885873
Chromosome Location	chr3:67348748-67348749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1387870	0.87[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1552621	0.86[ASN][1000 genomes]
rs2363705	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6548449	0.93[EUR][1000 genomes]
rs951518	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007093	chr3:67113534-67602973	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67343000-67352200	Weak transcription	Aorta	Aorta
2	chr3:67346000-67350200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:67346800-67348800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:67346800-67355600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:67347200-67352000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:67347200-67353000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:67347200-67355800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:67347400-67350200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:67347600-67349000	Enhancers	HepG2	liver
10	chr3:67347600-67362600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:67348600-67349000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links