Variant report

Variant	rs28858991
Chromosome Location	chr11:77039740-77039741
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2602488	0.81[EUR][1000 genomes]
rs2602489	0.82[EUR][1000 genomes]
rs2725815	0.82[EUR][1000 genomes]
rs2725826	0.83[EUR][1000 genomes]
rs2729762	0.84[EUR][1000 genomes]
rs2729769	0.82[EUR][1000 genomes]
rs2844337	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77027400-77043000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:77027600-77043000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:77028000-77068400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:77028200-77066000	Weak transcription	Fetal Kidney	kidney
5	chr11:77028400-77043000	Weak transcription	Fetal Lung	lung
6	chr11:77030400-77043000	Weak transcription	Colon Smooth Muscle	Colon
7	chr11:77030600-77086800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr11:77030800-77046800	Weak transcription	Small Intestine	intestine
9	chr11:77030800-77054200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:77031200-77043000	Weak transcription	Colonic Mucosa	Colon
11	chr11:77031600-77046600	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr11:77031600-77066400	Weak transcription	Gastric	stomach
13	chr11:77031600-77073800	Weak transcription	Spleen	Spleen
14	chr11:77031800-77070400	Weak transcription	Fetal Brain Male	brain
15	chr11:77032200-77066400	Weak transcription	Lung	lung
16	chr11:77032400-77043000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:77032600-77043200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:77032600-77046200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr11:77033400-77067200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr11:77033400-77090400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr11:77033600-77046800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:77033800-77043000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:77033800-77043000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:77033800-77043000	Weak transcription	Esophagus	oesophagus
25	chr11:77033800-77043000	Weak transcription	NHEK	skin
26	chr11:77033800-77045200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr11:77033800-77059200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr11:77034000-77043000	Weak transcription	Brain Germinal Matrix	brain
29	chr11:77034000-77043000	Weak transcription	Fetal Muscle Trunk	muscle
30	chr11:77034400-77042600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:77034400-77042800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr11:77034400-77043000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr11:77034400-77043000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr11:77034400-77043000	Weak transcription	Aorta	Aorta
35	chr11:77034400-77043000	Weak transcription	Ovary	ovary
36	chr11:77034400-77043000	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr11:77034400-77043000	Weak transcription	Thymus	Thymus
38	chr11:77034400-77043000	Weak transcription	NHDF-Ad	bronchial
39	chr11:77034400-77043400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr11:77034400-77043400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr11:77034400-77044600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr11:77034400-77045000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:77034400-77047000	Weak transcription	Left Ventricle	heart
44	chr11:77034400-77054600	Weak transcription	Pancreas	Pancrea
45	chr11:77034400-77059200	Weak transcription	Psoas Muscle	Psoas
46	chr11:77034400-77086200	Weak transcription	NHLF	lung
47	chr11:77034600-77042800	Weak transcription	Fetal Thymus	thymus
48	chr11:77034600-77043000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr11:77034600-77043000	Weak transcription	NH-A	brain
50	chr11:77034600-77043600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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