Variant report

Variant	rs28859686
Chromosome Location	chr17:33830033-33830034
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2586506	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv960581	chr17:33827264-33841554	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33823000-33830400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr17:33823400-33835600	Weak transcription	GM12878-XiMat	blood
3	chr17:33824200-33834800	Weak transcription	Spleen	Spleen
4	chr17:33826200-33835000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr17:33826400-33835000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr17:33826800-33832200	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr17:33827000-33840000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr17:33827600-33832400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr17:33828400-33831200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr17:33828400-33834800	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr17:33828400-33835800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr17:33828800-33831800	Weak transcription	Dnd41	blood
13	chr17:33828800-33835800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr17:33828800-33836000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr17:33829000-33831600	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr17:33829000-33831800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr17:33829000-33836400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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