Variant report

Variant	rs2886582
Chromosome Location	chr2:179078432-179078433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:179076997..179079458-chr2:179080638..179082932,3	K562	blood:
2	chr2:179076705..179078596-chr2:179080919..179084346,3	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6741976	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv875452	chr2:178963445-179167766	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179075200-179079000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr2:179076200-179079200	Enhancers	Fetal Brain Male	brain
3	chr2:179076600-179081400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr2:179076600-179087600	Weak transcription	Fetal Muscle Leg	muscle
5	chr2:179076600-179088000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:179077200-179088200	Weak transcription	Brain Anterior Caudate	brain
7	chr2:179077200-179089600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr2:179077600-179078600	Weak transcription	Brain Germinal Matrix	brain
9	chr2:179077600-179079000	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr2:179077800-179078600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
11	chr2:179077800-179078600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:179078000-179078600	Enhancers	HMEC	breast
13	chr2:179078000-179078800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:179078000-179079000	Enhancers	Fetal Brain Female	brain
15	chr2:179078000-179079000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr2:179078200-179078600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr2:179078200-179078600	Enhancers	NHEK	skin
18	chr2:179078200-179078800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr2:179078200-179078800	Enhancers	Brain Angular Gyrus	brain
20	chr2:179078200-179080400	Enhancers	Psoas Muscle	Psoas
21	chr2:179078400-179078600	Enhancers	K562	blood

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