Variant report

Variant	rs28870400
Chromosome Location	chr8:125975536-125975537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125973961..125977319-chr8:126009388..126012529,4	MCF-7	breast:
2	chr8:125974353..125976403-chr8:125979440..125981150,2	MCF-7	breast:
3	chr8:125968809..125971198-chr8:125975245..125977823,2	K562	blood:
4	chr8:125827676..125829350-chr8:125975033..125977709,2	K562	blood:
5	chr8:125549890..125551540-chr8:125974922..125977577,2	MCF-7	breast:
6	chr8:125973073..125977537-chr8:126009293..126012548,4	MCF-7	breast:
7	chr8:125973546..125976757-chr8:125983889..125987786,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104549	Chromatin interaction
ENSG00000180938	Chromatin interaction
ENSG00000147687	Chromatin interaction
ENSG00000253513	Chromatin interaction
ENSG00000255491	Chromatin interaction
ENSG00000147684	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2555724	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2555725	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2590665	0.94[ASN][1000 genomes]
rs2590667	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2725878	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28455785	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28558480	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3866472	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3909714	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3909715	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4006739	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4099573	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125969800-125985000	Weak transcription	Right Atrium	heart
2	chr8:125972800-125976200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr8:125973200-125975800	Enhancers	Placenta	Placenta
4	chr8:125973800-125976000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr8:125973800-125976000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr8:125973800-125976000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr8:125974000-125976800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:125974000-125977400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr8:125974000-125977600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:125974200-125976400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr8:125974400-125976000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr8:125974600-125976000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr8:125974600-125976000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr8:125975000-125976000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr8:125975000-125976600	Weak transcription	HepG2	liver
16	chr8:125975200-125975600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr8:125975200-125976600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr8:125975200-125979400	Weak transcription	Fetal Muscle Leg	muscle
19	chr8:125975400-125975800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr8:125975400-125975800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr8:125975400-125975800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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