Variant report
| Variant | rs2887669 |
|---|---|
| Chromosome Location | chrX:55252156-55252157 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000158639 | Chromatin interaction |
| ENSG00000256045 | Chromatin interaction |
| ENSG00000231947 | Chromatin interaction |
| ENSG00000238047 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:5)
| rs_ID | r2[population] |
|---|---|
| rs1927279 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs2209811 | 1.00[CEU][hapmap] |
| rs4826378 | 1.00[CEU][hapmap];0.96[YRI][hapmap] |
| rs5913793 | 1.00[CEU][hapmap];0.96[YRI][hapmap] |
| rs5914273 | 1.00[CEU][hapmap];0.96[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3410436 | chrX:55229677-55671986 | Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
