Variant report

Variant	rs28878291
Chromosome Location	chr7:70298350-70298351
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10226378	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10244947	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10245302	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10248357	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10252997	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10258059	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10258179	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10259518	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10263077	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1105549	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11486733	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12698945	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12698946	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13232813	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13240442	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13240454	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13438596	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1881013	0.83[AMR][1000 genomes]
rs28499173	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28545657	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28559780	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28610179	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28638367	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28796386	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34346022	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34382948	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34752673	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35716818	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35725834	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35926007	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35945582	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55785505	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55922222	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55976841	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56148881	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56356827	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56402150	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6460565	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6460566	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6460567	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6460568	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67936649	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6953195	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6962634	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025164	chr7:70061655-70469358	Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv538931	chr7:70061655-70469358	Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1017876	chr7:70073764-70434599	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1022747	chr7:70169254-70301285	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1028853	chr7:70211620-70523331	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv533212	chr7:70220687-70511129	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv888341	chr7:70249358-70316365	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv429772	chr7:70250125-70357061	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv607437	chr7:70251651-70568354	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1031764	chr7:70271645-70420426	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1034662	chr7:70275712-70722953	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1034508	chr7:70277984-70420426	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1019598	chr7:70285963-70358327	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv429773	chr7:70285994-70357061	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	esv3350369	chr7:70288094-70503884	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv429774	chr7:70294296-70357061	ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv428503	chr7:70295677-70463201	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv1016072	chr7:70297559-70358327	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70294800-70298600	Weak transcription	NHEK	skin
2	chr7:70294800-70298600	Weak transcription	Osteobl	bone
3	chr7:70295000-70298400	Weak transcription	NH-A	brain
4	chr7:70295000-70298600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:70295200-70298600	Weak transcription	HSMM	muscle
6	chr7:70295400-70300200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:70295400-70301800	Weak transcription	H9 Cell Line	embryonic stem cell

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