Variant report

Variant	rs28879427
Chromosome Location	chr4:69634496-69634497
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10017727	0.89[EUR][1000 genomes]
rs11249508	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11930531	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12645539	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1588708	0.88[EUR][1000 genomes]
rs1670747	0.87[EUR][1000 genomes]
rs1818490	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1828698	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1828704	0.89[EUR][1000 genomes]
rs1828705	0.89[EUR][1000 genomes]
rs1828706	0.89[EUR][1000 genomes]
rs1828707	0.89[EUR][1000 genomes]
rs1849536	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1877609	0.88[EUR][1000 genomes]
rs1877610	0.88[EUR][1000 genomes]
rs1877611	0.88[EUR][1000 genomes]
rs1913321	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1913323	0.89[EUR][1000 genomes]
rs293402	0.87[EUR][1000 genomes]
rs293403	0.87[EUR][1000 genomes]
rs3100643	0.88[EUR][1000 genomes]
rs3100644	0.89[EUR][1000 genomes]
rs3100653	0.88[EUR][1000 genomes]
rs3113332	0.89[EUR][1000 genomes]
rs364616	0.89[EUR][1000 genomes]
rs372723	0.89[EUR][1000 genomes]
rs372868	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs374041	0.88[EUR][1000 genomes]
rs377586	0.89[EUR][1000 genomes]
rs380168	0.89[EUR][1000 genomes]
rs381060	0.89[EUR][1000 genomes]
rs385121	0.88[EUR][1000 genomes]
rs387611	0.89[EUR][1000 genomes]
rs389715	0.89[EUR][1000 genomes]
rs390624	0.89[EUR][1000 genomes]
rs390650	0.89[EUR][1000 genomes]
rs392779	0.89[EUR][1000 genomes]
rs393038	0.89[EUR][1000 genomes]
rs395918	0.89[EUR][1000 genomes]
rs397678	0.89[EUR][1000 genomes]
rs398458	0.89[EUR][1000 genomes]
rs398783	0.89[EUR][1000 genomes]
rs401343	0.88[EUR][1000 genomes]
rs402247	0.88[EUR][1000 genomes]
rs403552	0.89[EUR][1000 genomes]
rs405499	0.89[EUR][1000 genomes]
rs406961	0.89[EUR][1000 genomes]
rs407182	0.89[EUR][1000 genomes]
rs407751	0.89[EUR][1000 genomes]
rs409976	0.89[EUR][1000 genomes]
rs414859	0.89[EUR][1000 genomes]
rs415876	0.89[EUR][1000 genomes]
rs416480	0.89[EUR][1000 genomes]
rs416593	0.88[EUR][1000 genomes]
rs416637	0.89[EUR][1000 genomes]
rs416814	0.89[EUR][1000 genomes]
rs416866	0.89[EUR][1000 genomes]
rs419780	0.89[EUR][1000 genomes]
rs423497	0.88[EUR][1000 genomes]
rs4235087	0.92[EUR][1000 genomes]
rs424254	0.88[EUR][1000 genomes]
rs425561	0.89[EUR][1000 genomes]
rs425760	0.89[EUR][1000 genomes]
rs426050	0.89[EUR][1000 genomes]
rs427743	0.89[EUR][1000 genomes]
rs428529	0.89[EUR][1000 genomes]
rs429247	0.89[EUR][1000 genomes]
rs429550	0.89[EUR][1000 genomes]
rs430638	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs431253	0.89[EUR][1000 genomes]
rs434190	0.89[EUR][1000 genomes]
rs434271	0.89[EUR][1000 genomes]
rs434462	0.89[EUR][1000 genomes]
rs442082	0.89[EUR][1000 genomes]
rs442412	0.89[EUR][1000 genomes]
rs445730	0.89[EUR][1000 genomes]
rs446358	0.89[EUR][1000 genomes]
rs446919	0.89[EUR][1000 genomes]
rs449162	0.89[EUR][1000 genomes]
rs4694324	0.93[EUR][1000 genomes]
rs60694884	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61634109	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6600842	0.88[EUR][1000 genomes]
rs66850244	0.89[EUR][1000 genomes]
rs68060708	0.89[EUR][1000 genomes]
rs6814072	0.89[EUR][1000 genomes]
rs6833127	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6833138	0.89[EUR][1000 genomes]
rs6842738	0.89[EUR][1000 genomes]
rs6854648	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72636508	0.89[EUR][1000 genomes]
rs72636509	0.89[EUR][1000 genomes]
rs72636510	0.89[EUR][1000 genomes]
rs72636512	0.89[EUR][1000 genomes]
rs73826110	0.89[EUR][1000 genomes]
rs7670472	0.88[EUR][1000 genomes]
rs7675032	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7684016	0.89[EUR][1000 genomes]
rs9993883	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005513	chr4:69446718-69890307	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv2763366	chr4:69592847-69661427	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1013885	chr4:69592847-69667996	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv829961	chr4:69592847-69695467	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv594579	chr4:69597175-69665970	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1014042	chr4:69599853-69667996	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv594580	chr4:69629425-69706273	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:69632000-69637200	Weak transcription	HepG2	liver

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