Variant report

Variant	rs28880633
Chromosome Location	chr4:125514533-125514534
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10009205	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10027566	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10518434	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10518435	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11728308	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11731276	0.81[EUR][1000 genomes]
rs11733407	0.81[EUR][1000 genomes]
rs11734957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008385	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008387	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28623585	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs313889	0.89[EUR][1000 genomes]
rs7692576	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125499600-125524400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125506000-125538800	Weak transcription	Ovary	ovary
3	chr4:125511400-125514600	Weak transcription	Aorta	Aorta
4	chr4:125512200-125516600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr4:125513200-125514600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr4:125513200-125514600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr4:125513400-125514600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr4:125514200-125514800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr4:125514400-125514800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:125514400-125515000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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