Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13413335	0.85[JPT][hapmap]
rs13417523	0.82[JPT][hapmap]
rs1351593	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1384294	0.80[AMR][1000 genomes]
rs1384295	0.80[AMR][1000 genomes]
rs16848753	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2054617	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2178575	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2178576	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs4404217	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs6435705	0.83[ASN][1000 genomes]
rs6435707	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6435708	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs6435709	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs6712295	0.86[JPT][hapmap]
rs6761143	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7561571	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7565257	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7571561	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7573568	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7598042	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs972491	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs974968	0.82[ASN][1000 genomes]
rs979124	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834527	chr2:213115966-213334308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv875811	chr2:213200920-213347104	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv432024	chr2:213314899-213446726	Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213323400-213328400	Weak transcription	Fetal Heart	heart
2	chr2:213326800-213331400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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