The 2.0 version of rSNPBase

Variant report

Variant rs28882725
Chromosome Location chr15:42924027-42924028
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:42874800-42929800 Weak transcription Fetal Brain Female brain
2 chr15:42897800-42930200 Weak transcription HSMM muscle
3 chr15:42898000-42967800 Weak transcription Fetal Intestine Small intestine
4 chr15:42898400-42932800 Weak transcription Esophagus oesophagus
5 chr15:42898600-42929800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr15:42900600-42928000 Weak transcription Placenta Placenta
7 chr15:42900600-42930000 Weak transcription HMEC breast
8 chr15:42900800-42929800 Weak transcription Sigmoid Colon Sigmoid Colon
9 chr15:42901000-42927800 Weak transcription Duodenum Smooth Muscle Duodenum
10 chr15:42901400-42928400 Weak transcription Rectal Smooth Muscle rectum
11 chr15:42901400-42929800 Weak transcription Brain Angular Gyrus brain
12 chr15:42901600-42927800 Weak transcription Adipose Nuclei Adipose
13 chr15:42901600-42930000 Weak transcription Brain Hippocampus Middle brain
14 chr15:42901600-42930400 Weak transcription Primary B cells from cord blood blood
15 chr15:42903200-42931000 Weak transcription Fetal Intestine Large intestine
16 chr15:42904000-42930200 Weak transcription Right Ventricle heart
17 chr15:42904200-42929800 Weak transcription Skeletal Muscle Male skeletal muscle
18 chr15:42904600-42930200 Weak transcription Aorta Aorta
19 chr15:42908800-43015000 Weak transcription Fetal Kidney kidney
20 chr15:42909600-42966400 Weak transcription Rectal Mucosa Donor 31 rectum
21 chr15:42910200-42927800 Weak transcription Breast Myoepithelial Primary Cells Breast
22 chr15:42910200-42929800 Weak transcription Fetal Heart heart
23 chr15:42910600-42927600 Weak transcription Left Ventricle heart
24 chr15:42912200-42927600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
25 chr15:42912200-42927800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
26 chr15:42912200-42927800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
27 chr15:42912200-42929400 Weak transcription Cortex derived primary cultured neurospheres brain
28 chr15:42912600-42927800 Weak transcription Fetal Muscle Trunk muscle
29 chr15:42912800-42924600 Weak transcription Primary hematopoietic stem cells short term culture blood
30 chr15:42912800-42924800 Weak transcription Primary hematopoietic stem cells blood
31 chr15:42912800-42933200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
32 chr15:42913200-42925000 Weak transcription Fetal Stomach stomach
33 chr15:42914800-42930200 Weak transcription Spleen Spleen
34 chr15:42915000-42927800 Weak transcription Ovary ovary
35 chr15:42915200-42925000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
36 chr15:42915200-42940000 Weak transcription HepG2 liver
37 chr15:42916400-42927800 Weak transcription Colon Smooth Muscle Colon
38 chr15:42921200-42929600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
39 chr15:42921400-42930200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
40 chr15:42921600-42929400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
41 chr15:42921600-42929800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
42 chr15:42921800-42928000 Weak transcription Stomach Smooth Muscle stomach
43 chr15:42922000-42929400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
44 chr15:42922000-42932200 Weak transcription K562 blood
45 chr15:42922000-42932800 Weak transcription Primary T cells fromperipheralblood blood
46 chr15:42922600-42926800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
47 chr15:42922600-42930000 Weak transcription NHDF-Ad bronchial
48 chr15:42923000-42958200 Weak transcription Hela-S3 cervix
49 chr15:42923200-42927600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
50 chr15:42923200-42927800 Weak transcription Brain Inferior Temporal Lobe brain

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Last update: Aug 31, 2015