Variant report

Variant	rs2888404
Chromosome Location	chr7:84981231-84981232
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12534830	0.90[ASN][1000 genomes]
rs12704123	0.81[EUR][1000 genomes]
rs1429748	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1527928	0.87[ASN][1000 genomes]
rs1527929	0.87[ASN][1000 genomes]
rs1918708	0.86[ASN][1000 genomes]
rs1918709	0.87[ASN][1000 genomes]
rs2033294	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2033295	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2564780	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2696164	0.87[ASN][1000 genomes]
rs2696173	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2732719	0.87[ASN][1000 genomes]
rs2732720	0.87[ASN][1000 genomes]
rs2732721	0.87[ASN][1000 genomes]
rs2732722	0.87[ASN][1000 genomes]
rs2732768	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2732770	0.87[ASN][1000 genomes]
rs34342012	0.86[ASN][1000 genomes]
rs4275151	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4333515	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4560724	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6951890	0.81[EUR][1000 genomes]
rs6971832	0.81[EUR][1000 genomes]
rs6972304	0.81[EUR][1000 genomes]
rs6976285	0.85[EUR][1000 genomes]
rs953072	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916645	chr7:84678606-85420011	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv869255	chr7:84678606-85444155	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1017834	chr7:84832489-85083958	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv538996	chr7:84832489-85083958	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv888647	chr7:84866308-85091003	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3327487	chr7:84901505-85320690	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84972600-84982600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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