Variant report

Variant	rs28889005
Chromosome Location	chr4:13701626-13701627
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10106265	0.86[ASN][1000 genomes]
rs10112018	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10956581	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10956585	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11777860	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12676393	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12681982	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13274156	0.82[ASN][1000 genomes]
rs28628856	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4351400	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4448257	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4513951	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4543523	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4599792	0.90[ASN][1000 genomes]
rs4610725	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4736764	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4736769	0.93[ASN][1000 genomes]
rs6470907	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6470915	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6470916	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6980784	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6983194	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7011825	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7341601	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7461132	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7461389	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7464150	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7464762	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7818364	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7831270	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7833260	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7837013	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7845857	0.82[ASN][1000 genomes]
rs7846220	0.80[ASN][1000 genomes]
rs9692690	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9693699	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007199	chr4:13081222-13903792	Strong transcription Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv537043	chr4:13081222-13903792	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv593750	chr4:13260705-13728333	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:13693600-13701800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:13696800-13705600	Weak transcription	Fetal Heart	heart
3	chr4:13700000-13705200	Weak transcription	Small Intestine	intestine
4	chr4:13700200-13707400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:13700400-13704000	Enhancers	Liver	Liver
6	chr4:13700600-13702000	Weak transcription	NHEK	skin
7	chr4:13701000-13704800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:13701200-13704200	Enhancers	HMEC	breast
9	chr4:13701200-13704200	Enhancers	NHDF-Ad	bronchial
10	chr4:13701200-13704200	Enhancers	Osteobl	bone
11	chr4:13701200-13704600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:13701400-13703400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:13701600-13702200	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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