Variant report

Variant	rs28895654
Chromosome Location	chr14:81822994-81822995
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11844267	1.00[AMR][1000 genomes]
rs11846655	1.00[AMR][1000 genomes]
rs11846778	1.00[AMR][1000 genomes]
rs11847949	1.00[AMR][1000 genomes]
rs11847979	1.00[AMR][1000 genomes]
rs58480431	1.00[AMR][1000 genomes]
rs71416865	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3358936	chr14:81786719-81928269	Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv902119	chr14:81810945-81884857	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81803800-81832200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:81808400-81829200	Weak transcription	HMEC	breast
3	chr14:81808800-81830200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr14:81813400-81829800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr14:81820800-81826200	Weak transcription	Psoas Muscle	Psoas
6	chr14:81820800-81836400	Weak transcription	K562	blood
7	chr14:81822000-81824200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr14:81822000-81831200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr14:81822000-81834600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr14:81822200-81830600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr14:81822400-81824800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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