Variant report

Variant	rs28899491
Chromosome Location	chr2:234710296-234710297
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000244474	Chromatin interaction
ENSG00000244122	Chromatin interaction
ENSG00000241635	Chromatin interaction
ENSG00000241119	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11563237	1.00[CEU][hapmap]
rs11900055	1.00[CEU][hapmap]
rs1500473	1.00[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17862893	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17862895	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28626554	1.00[CEU][hapmap]
rs28900433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28900435	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs28900677	1.00[CEU][hapmap]
rs28900682	1.00[CEU][hapmap]
rs28946897	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28946898	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4456702	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs719418	1.00[CEU][hapmap]
rs7591879	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234708000-234712600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:234709600-234710600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:234709600-234710800	Enhancers	HMEC	breast
4	chr2:234709800-234710400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:234709800-234710400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:234709800-234710400	Enhancers	A549	lung
7	chr2:234709800-234710400	Enhancers	NHEK	skin
8	chr2:234709800-234710600	Enhancers	GM12878-XiMat	blood
9	chr2:234710000-234710400	Enhancers	NH-A	brain
10	chr2:234710200-234710600	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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