Variant report

Variant	rs28901582
Chromosome Location	chr2:234810004-234810005
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11562977	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11563214	0.83[EUR][1000 genomes]
rs11563218	0.93[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12617866	0.93[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes]
rs12620352	0.93[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes]
rs1468521	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2362291	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28901579	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28901591	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28901600	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28901608	0.93[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28901610	0.93[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes]
rs28901615	1.00[EUR][1000 genomes]
rs28901618	0.93[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes]
rs28901629	0.93[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes]
rs28901637	1.00[EUR][1000 genomes]
rs28901868	0.83[EUR][1000 genomes]
rs28902174	0.83[EUR][1000 genomes]
rs4663342	0.93[CHB][hapmap];1.00[EUR][1000 genomes]
rs4663343	0.83[EUR][1000 genomes]
rs4663989	0.93[CHB][hapmap];1.00[EUR][1000 genomes]
rs7602303	0.93[CHB][hapmap];0.82[JPT][hapmap]
rs9789366	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9789398	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9789675	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234810000-234810400	Bivalent Enhancer	Duodenum Mucosa	Duodenum
2	chr2:234810000-234811600	Enhancers	Stomach Mucosa	stomach

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