Variant report

Variant	rs28901874
Chromosome Location	chr2:234882142-234882143
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:234877504..234880188-chr2:234881358..234883418,2	MCF-7	breast:
2	chr2:234881860..234884308-chr2:234890044..234891910,2	MCF-7	breast:
3	chr2:234873848..234876741-chr2:234880979..234883792,2	K562	blood:

Variant related genes	Relation type
ENSG00000144481	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11563207	1.00[EUR][1000 genomes]
rs11898669	1.00[EUR][1000 genomes]
rs1395838	1.00[EUR][1000 genomes]
rs28901883	1.00[EUR][1000 genomes]
rs28902221	1.00[EUR][1000 genomes]
rs28902241	1.00[EUR][1000 genomes]
rs28903972	1.00[AMR][1000 genomes]
rs28948675	1.00[EUR][1000 genomes]
rs6756537	1.00[EUR][1000 genomes]
rs73120779	1.00[EUR][1000 genomes]
rs7594792	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234849400-234883400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:234862600-234882200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:234863000-234882200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr2:234876000-234882200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:234876400-234882200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:234876400-234883400	Weak transcription	HSMMtube	muscle
7	chr2:234880200-234885800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:234881200-234882200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:234881200-234883400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:234881600-234883600	Enhancers	Placenta Amnion	Placenta Amnion
11	chr2:234881600-234886400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr2:234881800-234882200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr2:234881800-234882200	Enhancers	Esophagus	oesophagus
14	chr2:234881800-234882400	Bivalent Enhancer	Adipose Nuclei	Adipose
15	chr2:234881800-234883600	Enhancers	Spleen	Spleen
16	chr2:234881800-234883600	Enhancers	A549	lung
17	chr2:234881800-234884600	Enhancers	Liver	Liver
18	chr2:234881800-234886000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr2:234881800-234886400	Enhancers	HMEC	breast
20	chr2:234881800-234886400	Enhancers	NHEK	skin
21	chr2:234881800-234886600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr2:234881800-234890800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr2:234882000-234883200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr2:234882000-234883400	Enhancers	H1 Cell Line	embryonic stem cell
25	chr2:234882000-234883800	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr2:234882000-234884000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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