Variant report

Variant	rs28901875
Chromosome Location	chr2:234882936-234882937
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:234877504..234880188-chr2:234881358..234883418,2	MCF-7	breast:
2	chr2:234881860..234884308-chr2:234890044..234891910,2	MCF-7	breast:
3	chr2:234873848..234876741-chr2:234880979..234883792,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HJURP-6	chr2:234882860-234883479	NONHSAT077522

Variant related genes	Relation type
ENSG00000144481	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10204079	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234849400-234883400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:234876400-234883400	Weak transcription	HSMMtube	muscle
3	chr2:234880200-234885800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:234881200-234883400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:234881600-234883600	Enhancers	Placenta Amnion	Placenta Amnion
6	chr2:234881600-234886400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:234881800-234883600	Enhancers	Spleen	Spleen
8	chr2:234881800-234883600	Enhancers	A549	lung
9	chr2:234881800-234884600	Enhancers	Liver	Liver
10	chr2:234881800-234886000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:234881800-234886400	Enhancers	HMEC	breast
12	chr2:234881800-234886400	Enhancers	NHEK	skin
13	chr2:234881800-234886600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr2:234881800-234890800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:234882000-234883200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr2:234882000-234883400	Enhancers	H1 Cell Line	embryonic stem cell
17	chr2:234882000-234883800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr2:234882000-234884000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr2:234882200-234883200	Weak transcription	Esophagus	oesophagus
20	chr2:234882200-234883600	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr2:234882200-234884000	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr2:234882200-234884000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr2:234882200-234884200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr2:234882200-234885200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr2:234882200-234886200	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr2:234882200-234886600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr2:234882400-234883600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr2:234882400-234883800	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr2:234882400-234884200	Enhancers	HUVEC	blood vessel
30	chr2:234882400-234884400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr2:234882400-234884600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr2:234882400-234886000	Enhancers	NH-A	brain
33	chr2:234882400-234886000	Enhancers	NHDF-Ad	bronchial
34	chr2:234882400-234892200	Enhancers	NHLF	lung
35	chr2:234882600-234883200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr2:234882600-234883800	Weak transcription	Brain Cingulate Gyrus	brain
37	chr2:234882800-234883200	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr2:234882800-234884000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr2:234882800-234885000	Weak transcription	HepG2	liver

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